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tisdag 14 december 2021

TACR2 (10q22.1) Substanssi K reseptori. Myös PI/Ca/G-proteiinisignalointiin assosioituva

 

Aliases for TACR2 Gene

  • GeneCards Symbol: TACR2 2
  • Tachykinin Receptor 2 2 3 4 5
  • NK2R 2 3 4 5
  • SKR 2 3 4 5
  • Neurokinin A Receptor 2 3 4
  • Substance-K Receptor 2 3 4
  • NKNAR 3 4 5
  • TAC2R 3 4 5
  • Neurokinin B Receptor 2 3
  • NK-2 Receptor 3 4
  • NK-2R 3 4
  • Seven Transmembrane Helix Receptor 3
  • Neurokinin 2 Receptor 3

Entrez Gene Summary for TACR2 Gene

  • This gene belongs to a family of genes that function as receptors for tachykinins. Receptor affinities are specified by variations in the 5'-end of the sequence. The receptors belonging to this family are characterized by interactions with G proteins and 7 hydrophobic transmembrane regions. This gene encodes the receptor for the tachykinin neuropeptide substance K, also referred to as neurokinin A. [provided by RefSeq, Jul 2008]

GeneCards Summary for TACR2 Gene

TACR2 (Tachykinin Receptor 2) is a Protein Coding gene. Diseases associated with TACR2 include Baritosis and Constipation. Among its related pathways are RET signaling and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and substance K receptor activity. An important paralog of this gene is TACR3.

UniProtKB/Swiss-Prot Summary for TACR2 Gene

  • This is a receptor for the tachykinin neuropeptide substance K (neurokinin A). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance K > neuromedin-K > substance P.

Tocris Summary for TACR2 Gene

  • The neurokinin 2 (NK2) receptor is a member of the tachykinin family of G-protein-coupled receptors which also includes NK1 and NK3 receptors. The NK2 receptor is predominantly expressed in the periphery (including inflammatory cells and bronchial smooth muscle).

Gene Wiki entry for TACR2 Gene

Additional gene information for TACR2 Gene

TACR1 geeni (2p12). Substanssi-P reseptori liittyy G-proteiinilla aktivoituvaan PI/Ca sekundääriseen välittäjäainejärjestelmään

 https://www.genecards.org/cgi-bin/carddisp.pl?gene=TACR1&keywords=Tachykinin

 

Aliases for TACR1 Gene

  • GeneCards Symbol: TACR1 2
  • Tachykinin Receptor 1 2 3 4 5
  • NK1R 2 3 4 5
  • SPR 2 3 4 5
  • Substance-P Receptor 2 3 4
  • TAC1R 3 4 5
  • NKIR 2 3 5
  • Neurokinin Receptor 1 2 3
  • NK-1 Receptor 3 4
  • NK-1R 3 4
  • Tachykinin Receptor 1 (Substance P Receptor; Neurokinin-1 Receptor) 3

Entrez Gene Summary for TACR1 Gene

  • This gene belongs to a gene family of tachykinin receptors. These tachykinin receptors are characterized by interactions with G proteins and contain seven hydrophobic transmembrane regions. This gene encodes the receptor for the tachykinin substance P, also referred to as neurokinin 1. The encoded protein is also involved in the mediation of phosphatidylinositol metabolism of substance P. [provided by RefSeq, Sep 2008]

GeneCards Summary for TACR1 Gene

TACR1 (Tachykinin Receptor 1) is a Protein Coding gene. Diseases associated with TACR1 include Cystitis and Causalgia. Among its related pathways are RET signaling and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include G protein-coupled receptor activity and substance P receptor activity. An important paralog of this gene is TACR3.

UniProtKB/Swiss-Prot Summary for TACR1 Gene

  • This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K.

Tocris Summary for TACR1 Gene

  • The neurokinin 1 (NK1) receptor is a member of the tachykinin family of G-protein-coupled receptors which also includes NK2 and NK3 receptors. The NK1 receptor is localized in high concentrations in the CNS (particularly the striatum and amygdala) and peripheral tissues.

torsdag 9 december 2021

Long covid: Plasmalipidiepätasapainoa

https://link.springer.com/chapter/10.1007%2F978-3-030-50621-6_7 

Kerään tähän arikkeleita ,joita pitää harkiten lukea.

Aivojen plasmalipeideissä on  pieni osa fosfatidyylilipidejä, lipositoleja, ja niillä on oma tärkeä modulinsa varsinkin  harmaissa  hermosoluissa. Niillä on erittäin funktionaalinen modulinsa (, josta tässä fytiiniblogissa olen käsitellyt eri molekyylejä vuosien varrella. Covidin jälkeen on havaittu fosfolipidikirjossa  epätasapainoa ja  korostuneeksi näyttää jäävän  tästä  lipositolimodulipuolesta lyso-muotoa, lysofosfolipidiä lysofosfatidyyli-inositolia.  Asian taustalla piilee  sars-2 viruksen raju  soluaineenvaihdunnan manipulointi, joka jättää siten jälkeensä tälle  inositolia sisältävälle järjestelmälle mahdollisuuden paisua.   Tämä heijastuu kyllä  psyykiseen toimitnaan lähinnä mielialaan monivivahteisesti, josmistä  pitää saada  ajan mitaan  tarpeeksi käsitystä . Muuten ei  pääse jyvälle siitä, millä tavalla voi johtaa metaboliaa korjaantumiskynnyksen paremmalle puolelle. Itsestään korjaantuvuus kudoksissa ihmisellä on hyvä, muta  on jokin kynnys joka  pitää ylittää, että päästään sellaisen normaliteetin puolelle.  Kyse ei ole vain aivojen inositolimodulista, vaan myös kohdista josa tätä  modulia käytetään. Yksi on  sokeriaineenvaihdunta.  Ilmeisesti vaaraa on keuhkofibroosista ja  non-alkoholisesta  maksanrasvoittumisestakin jos tämä ei oikene.  Viruksen yksi tapa moduloida  energia-aineita näyttää olleen ATP, CTP, TTP ja  TTP  peräisten energioiden  purkaminen, fosfaattien irrottaminen ja samalla GTP-peräisen energian suosiminen. En tiedä jos tässä olen  asiasta jyvällä. Tällöin on paljon  tarjolla esim AMP ja CMP- muotoa, joita   oinositoliaineenvaihdunta käyttää.   aivojen puolella  lysofosfatidylinositoli muodostaa  protektiivisuutta  erään artikkelin mukaanJos  ATP ja CTP  ovat purkaantuneita ,  fosfatidyyli-inositoli ei pysty nousemaan energiarikakisiin muotoihinsa.

Covidin jälkeen fosfolipidien profiiliin tulee epätasapainoa. Lysofosfatidyyli-inositolia ja fosfatidyyli-inositolia tavallista enemmän, muita vähemmän

 Aiemmin ei ole huomiotani kiinnittänyt  lysofosfatidyyli-inositoli, joten otan siitä  tietoa esiin nyt.

The L-alpha-Lysophosphatidylinositol/G Protein-Coupled Receptor 55 System Induces the Development of Nonalcoholic Steatosis and Steatohepatitis.
Fondevila MF, Fernandez U, Gonzalez-Rellan MJ, Da Silva Lima N, Buque X, Gonzalez-Rodriguez A, Alonso C, Iruarrizaga-Lejarreta M, Delgado TC, Varela-Rey M, Senra A, Garcia-Outeiral V, Novoa E, Iglesias C, Porteiro B, Beiroa D, Folgueira C, Tojo M, Torres JL, Hernández-Cosido L, Blanco Ó, Arab JP, Barrera F, Guallar D, Fidalgo M, López M, Dieguez C, Marcos M, Martinez-Chantar ML, Arrese M, Garcia-Monzon C, Mato JM, Aspichueta P, Nogueiras R. Hepatology. 2021 Feb;73(2):606-624. doi: 10.1002/hep.31290. Epub 2020 Nov 13. PMID: 32329085 Free PMC article.
BACKGROUND AND AIMS: G protein-coupled receptor (GPR) 55 is a putative cannabinoid receptor, and l-alpha-lysophosphatidylinositol (LPI) is its only known endogenous ligand. ...
Cannabinoid Receptor-Related Orphan G Protein-Coupled Receptors.
Irving A, Abdulrazzaq G, Chan SLF, Penman J, Harvey J, Alexander SPH. Adv Pharmacol. 2017;80:223-247. doi: 10.1016/bs.apha.2017.04.004. Epub 2017 Jun 12. PMID: 28826536 Review.
GPR18, GPR55, and GPR119 exhibit limited sequence homology with the established CB(1) and CB(2) cannabinoid receptors. However, the pharmacology of these orphan receptors displays overlap with CB(1) and CB(2) receptors, particularly for GPR18 and GPR55. ...Th …
GPR55, a lysophosphatidylinositol receptor with cannabinoid sensitivity?
Nevalainen T, Irving AJ. Curr Top Med Chem. 2010;10(8):799-813. doi: 10.2174/156802610791164229. PMID: 20370712 Review.
However, to date, the most potent ligand identified for GPR55 is the endogenous phospholipid, lysophosphatidylinositol (LPI). GPR55 is thought to link predominantly G-protein alpha(13), where it promotes Rho-dependent signalling. ...This article reviews the current status …
Lysophosphatidylinositol, an Endogenous Ligand for G Protein-Coupled Receptor 55, Has Anti-inflammatory Effects in Cultured Microglia.
Minamihata T, Takano K, Moriyama M, Nakamura Y. Inflammation. 2020 Oct;43(5):1971-1987. doi: 10.1007/s10753-020-01271-4. PMID: 32519268
Lysophosphatidylinositol (LysoPI), an endogenous ligand for G protein-coupled receptor (GPR) 55, has been known to show various functions in several tissues and cells; however, its roles in the central nervous system (CNS) are not well known. ...
Druggable Lysophospholipid Signaling Pathways.
Yanagida K, Valentine WJ. Adv Exp Med Biol. 2020;1274:137-176. doi: 10.1007/978-3-030-50621-6_7. PMID: 32894510 Review.
Several crystal structures of LPA receptors and ATX have been solved, which will accelerate development of highly selective and effective LPA signaling targeting compounds. We also review additional bioactive lysophospholipid (LPL) signaling molecules including lysophospha …
Minireview: recent developments in the physiology and pathology of the lysophosphatidylinositol-sensitive receptor GPR55.
Henstridge CM, Balenga NA, Kargl J, Andradas C, Brown AJ, Irving A, Sanchez C, Waldhoer M. Mol Endocrinol. 2011 Nov;25(11):1835-48. doi: 10.1210/me.2011-1197. Epub 2011 Sep 29. PMID: 21964594 Free PMC article. Review.
Emerging data suggest that off-target cannabinoid effects may be mediated via novel seven-transmembrane spanning/G protein-coupled receptors. Due to its cannabinoid sensitivity, the G protein-coupled receptor 55 (GPR55) was recently proposed as a candidate; however, …
Role of the lysophosphatidylinositol/GPR55 axis in cancer.
Falasca M, Ferro R. Adv Biol Regul. 2016 Jan;60:88-93. doi: 10.1016/j.jbior.2015.10.003. Epub 2015 Oct 28. PMID: 26588872 Review.
Lysophosphatidylinositol (LPI) is a well-known bioactive lipid that is able to activate signalling cascades relevant to cell proliferation, migration, survival and tumourigenesis. It is well-established that the G protein-coupled receptor 55 (GPR55) is the specific
Lysophosphatidylinositol Signalling and Metabolic Diseases.
Arifin SA, Falasca M. Metabolites. 2016 Jan 15;6(1):6. doi: 10.3390/metabo6010006. PMID: 26784247 Free PMC article. Review.
In this review, we will focus on the physiological and pathophysiological roles of the lysophospholipid mediator lysophosphatidylinositol (LPI) and its receptor G-protein coupled receptor 55 (GPR55) in metabolic diseases. ...
A putative lysophosphatidylinositol receptor GPR55 modulates hippocampal synaptic plasticity.
Hurst K, Badgley C, Ellsworth T, Bell S, Friend L, Prince B, Welch J, Cowan Z, Williamson R, Lyon C, Anderson B, Poole B, Christensen M, McNeil M, Call J, Edwards JG. Hippocampus. 2017 Sep;27(9):985-998. doi: 10.1002/hipo.22747. Epub 2017 Jun 27. PMID: 28653801 Free PMC article.
GPR55, an orphan G-protein coupled receptor, is activated by lysophosphatidylinositol (LPI) and the endocannabinoid anandamide, as well as by other compounds including THC. ..

torsdag 18 november 2021

Plektiini - homologi domeenin (PH) sisältävistä proteiineista, joissa on Sars-2 proteiinien interaktioproteiineja

18.11.2021  Otan Wikipediasitaatin  PH-domaanin sisältävistä proteiineista, sillä huomaan eräästä  virus-ihmisproteiini-ointeraktioluettelosta, että 

Sars-2 viruksen nsp12 tekee interaktion erääseen PH-domaanin sisältävään proteiiniin 5A (geeni. PLEKHA5).

Sars-2 ORF8 proteiini tekee interaktion PLEKHF2  proteiiniin, joka on plekstriinihomologi-ja FYVE-domeenin sisältävä  (ZFYVE18).

Sars-2 nsp13 tekee interaktion CIT (citron rho-interacting S/T kinase) entsyymiin. 

Otan näistä kolmesta esimerkistä GeneCard lähteestä sitaatteja esii Exem 1- 3.


 

 

https://en.wikipedia.org/wiki/Pleckstrin_homology_domain

Wikipediasitaatti: 

"Pleckstrin homology domain (PH domain) or (PHIP) is a protein domain of approximately 120 amino acids that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton.[1][2][3][4][5][6][7]

This domain can bind phosphatidylinositol lipids within biological membranes (such as phosphatidylinositol (3,4,5)-trisphosphate and phosphatidylinositol (4,5)-bisphosphate),[8] and proteins such as the βγ-subunits of heterotrimeric G proteins,[9] and protein kinase C.[10] Through these interactions, PH domains play a role in recruiting proteins to different membranes, thus targeting them to appropriate cellular compartments or enabling them to interact with other components of the signal transduction pathways.

Lipid binding specificity

Individual PH domains possess specificities for phosphoinositides phosphorylated at different sites within the inositol ring, e.g., some bind phosphatidylinositol (4,5)-bisphosphate but not phosphatidylinositol (3,4,5)-trisphosphate or phosphatidylinositol (3,4)-bisphosphate, while others may possess the requisite affinity. This is important because it makes the recruitment of different PH domain containing proteins sensitive to the activities of enzymes that either phosphorylate or dephosphorylate these sites on the inositol ring, such as phosphoinositide 3-kinase or PTEN, respectively. Thus, such enzymes exert a part of their effect on cell function by modulating the localization of downstream signaling proteins that possess PH domains that are capable of binding their phospholipid products.

Structure

The 3D structure of several PH domains has been determined.[11] All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect while providing the source of the domain's specificity. The only conserved residue among PH domains is a single tryptophan (W) located within the alpha helix that serves to nucleate the core of the domain.

Proteins containing PH domain

PH domains can be found in many different proteins, such as OSBP or ARF. Recruitment to the Golgi apparatus in this case is dependent on both PtdIns and ARF. A large number of PH domains have poor affinity for phosphoinositides and are hypothesized to function as protein binding domains. A Genome-wide look in Saccharomyces cerevisiae showed that most of the 33 yeast PH domains are indeed promiscuous in binding to phosphoinositides, while only one (Num1-PH) behaved highly specific .[12] Proteins reported to contain PH domains belong to the following families:

Subfamilies

Examples

Human genes encoding proteins containing this domain include:

See also

 

Exem 1. 

Summaries for PLEKHF2 Gene

GeneCards Summary for PLEKHF2 Gene

PLEKHF2 (Pleckstrin Homology And FYVE Domain Containing 2) is a Protein Coding gene. An important paralog of this gene is PLEKHF1.

UniProtKB/Swiss-Prot Summary for PLEKHF2 Gene

  • May play a role in early endosome fusion upstream of RAB5, hence regulating receptor trafficking and fluid-phase transport. Enhances cellular sensitivity to TNF-induced apoptosis (PubMed:18288467).
  • ZFYVE18 2 3 4 5
  • PHAFIN2 2 3 5
  • Endoplasmic Reticulum-Associated Apoptosis-Involved Protein Containing PH And FYVE Domains 3 4

 Exem2.

GeneCards Summary for PLEKHA5 Gene

PLEKHA5 (Pleckstrin Homology Domain Containing A5) is a Protein Coding gene. Diseases associated with PLEKHA5 include Cleft Lip With Or Without Cleft Palate and Blepharocheilodontic Syndrome 1. Among its related pathways are PI Metabolism and Glycerophospholipid biosynthesis. Gene Ontology (GO) annotations related to this gene include phosphatidylinositol-3-phosphate binding and phosphatidylinositol-3,5-bisphosphate binding. An important paralog of this gene is PLEKHA7.

Gene Wiki entry for PLEKHA5 Gene

Exem.3

Cit

Entrez Gene Summary for CIT Gene

  • This gene encodes a serine/threonine-protein kinase that functions in cell division. Together with the kinesin KIF14, this protein localizes to the central spindle and midbody, and functions to promote efficient cytokinesis. This protein is involved in central nervous system development. Polymorphisms in this gene are associated with bipolar disorder and risk for schizophrenia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2011]

GeneCards Summary for CIT Gene

CIT (Citron Rho-Interacting Serine/Threonine Kinase) is a Protein Coding gene. Diseases associated with CIT include Microcephaly 17, Primary, Autosomal Recessive and Primary Autosomal Recessive Microcephaly. Among its related pathways are Signaling by Rho GTPases and Actin Nucleation by ARP-WASP Complex. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is CDC42BPB.

UniProtKB/Swiss-Prot Summary for CIT Gene

  • Plays a role in cytokinesis. Required for KIF14 localization to the central spindle and midbody. Putative RHO/RAC effector that binds to the GTP-bound forms of RHO and RAC1. It probably binds p21 with a tighter specificity in vivo. Displays serine/threonine protein kinase activity. Plays an important role in the regulation of cytokinesis and the development of the central nervous system. Phosphorylates MYL9/MLC2.