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söndag 1 maj 2016

E-vitamiinia käsitelevä proteiini TAP

alpha-tocopherol transfer protein [Homo sapiens]

NCBI Reference Sequence: NP_000361.1
LOCUS       NP_000361                278 aa            linear   PRI 15-MAR-2015
DEFINITION  alpha-tocopherol transfer protein [Homo sapiens].
ACCESSION   NP_000361 XP_001128514
VERSION     NP_000361.1  GI:4507723
DBSOURCE    REFSEQ: accession NM_000370.3
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (residues 1 to 278)
  AUTHORS   Kono N, Ohto U, Hiramatsu T, Urabe M, Uchida Y, Satow Y and Arai H.
  TITLE     Impaired alpha-TTP-PIPs interaction underlies familial vitamin E
            deficiency
  JOURNAL   Science 340 (6136), 1106-1110 (2013)
   PUBMED   23599266
  REMARK    GeneRIF: The crystal structure of the
            alpha-TTP-phosphatidylinositol phosphates (PIPs) complex revealed
            that the familial vitamin E deficiency-related arginine residues
            interacted with phosphate groups of the PIPs and that the PIPs
            binding caused the lid of the alpha-tocopherol-binding pocket to
            open.
REFERENCE   2  (residues 1 to 278)
  AUTHORS   Etzl RP, Vrekoussis T, Kuhn C, Schulze S, Poschl JM, Makrigiannakis
            A, Jeschke U and Rotzoll DE.
  TITLE     Oxidative stress stimulates alpha-tocopherol transfer protein in
            human trophoblast tumor cells BeWo
  JOURNAL   J Perinat Med 40 (4), 373-378 (2012)
   PUBMED   22752767
  REMARK    GeneRIF: study demonstrated that alpha -TTP can be upregulated in
            case of oxidative stress in BeWo trophoblast cells; speculate that
            possibly, alpha -TTP is notonly involved in normal pregnancy, but
            also in cases of pregnancy disorders with intense oxidative stress
            Publication Status: Online-Only
REFERENCE   3  (residues 1 to 278)
  AUTHORS   Zhang WX, Thakur V, Lomize A, Pogozheva I, Panagabko C, Cecchini M,
            Baptist M, Morley S, Manor D and Atkinson J.
  TITLE     The contribution of surface residues to membrane binding and ligand
            transfer by the alpha-tocopherol transfer protein (alpha-TTP)
  JOURNAL   J. Mol. Biol. 405 (4), 972-988 (2011)
   PUBMED   21110980
  REMARK    GeneRIF: Substitution of residues in helices A8 (F165A and F169A)
            and A10 (I202A, V206A and M209A) decreased the rate of
            intermembrane ligand transfer as well as protein adsorption to
            phospholipid bilayers.
REFERENCE   4  (residues 1 to 278)
  AUTHORS   Booij JC, Bakker A, Kulumbetova J, Moutaoukil Y, Smeets B, Verheij
            J, Kroes HY, Klaver CC, van Schooneveld M, Bergen AA and Florijn
            RJ.
  TITLE     Simultaneous mutation detection in 90 retinal disease genes in
            multiple patients using a custom-designed 300-kb retinal
            resequencing chip
  JOURNAL   Ophthalmology 118 (1), 160-167 (2011)
   PUBMED   20801516
  REMARK    GeneRIF: Observational study of genetic testing. (HuGE Navigator)
REFERENCE   5  (residues 1 to 278)
  AUTHORS   Morley S, Thakur V, Danielpour D, Parker R, Arai H, Atkinson J,
            Barnholtz-Sloan J, Klein E and Manor D.
  TITLE     Tocopherol transfer protein sensitizes prostate cancer cells to
            vitamin E
  JOURNAL   J. Biol. Chem. 285 (46), 35578-35589 (2010)
   PUBMED   20826775
  REMARK    GeneRIF: Data show that reduction ('knockdown') of tocopherol
            transfer protein (TTP) expression resulted in resistance to the
            vitamin E.
REFERENCE   6  (residues 1 to 278)
  AUTHORS   Gotoda T, Arita M, Arai H, Inoue K, Yokota T, Fukuo Y, Yazaki Y and
            Yamada N.
  TITLE     Adult-onset spinocerebellar dysfunction caused by a mutation in the
            gene for the alpha-tocopherol-transfer protein
  JOURNAL   N. Engl. J. Med. 333 (20), 1313-1318 (1995)
   PUBMED   7566022
REFERENCE   7  (residues 1 to 278)
  AUTHORS   Arita M, Sato Y, Miyata A, Tanabe T, Takahashi E, Kayden HJ, Arai H
            and Inoue K.
  TITLE     Human alpha-tocopherol transfer protein: cDNA cloning, expression
            and chromosomal localization
  JOURNAL   Biochem. J. 306 (PT 2), 437-443 (1995)
   PUBMED   7887897
REFERENCE   8  (residues 1 to 278)
  AUTHORS   Ouahchi K, Arita M, Kayden H, Hentati F, Ben Hamida M, Sokol R,
            Arai H, Inoue K, Mandel JL and Koenig M.
  TITLE     Ataxia with isolated vitamin E deficiency is caused by mutations in
            the alpha-tocopherol transfer protein
  JOURNAL   Nat. Genet. 9 (2), 141-145 (1995)
   PUBMED   7719340
REFERENCE   9  (residues 1 to 278)
  AUTHORS   Ben Hamida C, Doerflinger N, Belal S, Linder C, Reutenauer L, Dib
            C, Gyapay G, Vignal A, Le Paslier D and Cohen D.
  CONSRTM   et al
  TITLE     Localization of Friedreich ataxia phenotype with selective vitamin
            E deficiency to chromosome 8q by homozygosity mapping
  JOURNAL   Nat. Genet. 5 (2), 195-200 (1993)
   PUBMED   8252047
REFERENCE   10 (residues 1 to 278)
  AUTHORS   Schuelke,M.
  TITLE     Ataxia with Vitamin E Deficiency
  JOURNAL   (in) Pagon RA, Adam MP, Ardinger HH, Bird TD, Dolan CR, Fong CT,
            Smith RJH and Stephens K (Eds.);
            GENEREVIEWS(R);
            (1993)
   PUBMED   20301419
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from BC058000.1, BC041784.1 and
            AC120042.3.
            This sequence is a reference standard in the RefSeqGene project.
            On Sep 20, 2006 this sequence version replaced gi:113420428.
            
            Summary: This gene encodes a soluble protein that binds
            alpha-tocopherol, a form of vitamin E, with high selectivity and
            affinity. This protein plays an important role in regulating
            vitamin E levels in the body by transporting vitamin E between
            membrane vesicles and facilitating the secretion of vitamin E from
            hepatocytes to circulating lipoproteins. Mutations in this gene
            cause hereditary vitamin E deficiency (ataxia with vitamin E
            deficiency, AVED) and retinitis pigmentosa. [provided by RefSeq,
            Nov 2009].
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058000.1, BC041784.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968540, SAMEA1970526
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Homo sapiens"
                     /db_xref="taxon:9606"
                     /chromosome="8"
                     /map="8q12.3"
     Protein         1..278
                     /product="alpha-tocopherol transfer protein"
                     /note="tocopherol (alpha) transfer protein (ataxia
                     (Friedreich-like) with vitamin E deficiency); alpha-TTP"
                     /calculated_mol_wt=31619
     Region          <40 ..73="" cdd="" cddsrv.cgi="" db_xref="CDD:<a href=" http:="" note="CRAL/TRIO, N-terminal domain; smart01100" region_name="CRAL_TRIO_N" tructure="" uid="215024" www.ncbi.nlm.nih.gov="">215024
" Region 95..248 /region_name="SEC14" /note="Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to...; cd00170" /db_xref="CDD:238099" Site order(113,115,117,143,158,160,176,180,184,188,191,194,196, 203,210,222) /site_type="other" /note="phospholipid binding pocket [chemical binding]" /db_xref="CDD:238099" Site order(189,221) /site_type="other" /note="salt bridge" /db_xref="CDD:238099" CDS 1..278 /gene="TTPA" /gene_synonym="alphaTTP; ATTP; AVED; TTP1" /coded_by="NM_000370.3:33..869" /db_xref="CCDS:CCDS6178.1" /db_xref="GeneID:7274" /db_xref="HGNC:HGNC:12404" /db_xref="HPRD:02685" /db_xref="MIM:600415" ORIGIN 1 maearsqpsa gpqlnalpdh spllqpglaa lrrrareagv plaplpltds fllrflrard 61 fdldlawrll knyykwraec peisadlhpr siigllkagy hgvlrsrdpt gskvliyria 121 hwdpkvftay dvfrvslits elivqevetq rngikaifdl egwqfshafq itpsvakkia 181 avltdsfplk vrgihlinep vifhavfsmi kpfltekike rihmhgnnyk qsllqhfpdi 241 lpleyggeef smedicqewt nfimksedyl ssisesiq //

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