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torsdag 20 oktober 2022

Annexin A2 (ANXA2) sitoutuu PI (4,5)P2 -fosfatidylinositidilajiin solun cytokineesin alkutapahtumissa.

 

onsdag 19 oktober 2022

Lipocortin III, ANXA3 tuottaa (hydrolysoi esiin) Inositoli-1-fosfaattimuotoa Ins-2-fosfaatista.

Reaktion merkitys:  Katabolinen  inositolipolyfosfaattien purkaminen fosfaateista  takaisin   siihen inositolimuotoon,  muotoon, josta  voi jälleen alkaa  fosfolipidien synteesi  ( kuten myoinositolin fosfatidihapon ja  CTP-energian avulla   de novo) solussa kohti  PI, PIP, PIP2 muotoja).

 https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/annexin

Inositol Phosphate Metabolism

Theodora S. Ross, in Cellular and Molecular Mechanisms of Inflammation: Signal Transduction in Inflammatory Cells, Part A, 1992

Cyclic Hydrolase

The primary sequence of the cyclic hydrolase is identical to that of lipocortin III, a member of a large family of homologous calcium- and phospholipid-binding proteins without defined biological functions (88). Some of these proteins have been shown to be phosphorylated in response to growth factors. The purified enzyme (33 kDa) is inhibited by inositol 2-phosphate [Ins(2)P], Zn2+, and glycerophosphoinositol (GroPIns) and stimulated by acidic phospholipids (87, 89). The pattern of interaction with particular phospholipids is the same as that previously observed for lipocortins (88, 90). The mechanism of inhibition by GroPIns is due to its ability to act as a substrate for this enzyme (89). The regulatory significance of this reaction is unclear, as the level of GroPIns-hydrolyzing activity measured in cellular extracts does not inversely correlate with the cellular levels of GroPIns (T. S. Ross and P. W. Majerus, unpublished observations). The presence of significant amounts of Ins(2)P and GroPIns in cells has been well documented (89, 91) and suggests that they may function as regulators of cellular cIns(1:2)P levels.

Measurement of the cyclic hydrolase activity in cellular extracts has unveiled a very interesting pattern. Cells with relatively low to nondetectable activity were either completely transformed or partially transformed (92). When levels of cyclic inositol phosphates were measured in these cells, it was found that cIns(1:2)P increased in proportion to the decreased cyclic hydrolase activity. The enzyme activity is also increased within one cell type when it is in a confluent state as compared to a logarithmically growing state. Overexpression of cyclic hydrolase in cells decreases the cIns(1:2)P levels as well as the final saturation density. In addition, high endogenous expression of cyclic hydrolase in cells tends to correlate with the differentiated state (e.g., high levels in platelets, brain, and neutrophils and low levels in several immortalized tissue culture cell lines of fibroblasts and T cells). The finding that this correlation exists both in nature and during heterologous expression of the enzyme makes the discovery of a cellular function for cIns(1:2)P likely to be successful. Further studies of the regulation of the cyclic hydrolase activity and cIns(1:2)P cellular levels will yield valuable information as to how to continue the quest for the function(s) of the cyclic bond.

 

 https://www.jlr.org/article/S0022-2275(20)34570-3/fulltext

 https://www.nature.com/articles/ncomms9505

 Jälkimmäisessä artikkelsisa näkyy se Ins-1 fosfaattimuoto, oka rikastuu  PIP muotoon eli muuttuu samalla  vesiliukoisten poly ja monofosfaattein  puolelta rasvaliukoisiin, fosfolipidien puolelle, jolloin siitä tulee  annexiinijärjestelmälle molekyyli, johon  jokin ANX  voi sitoutua. Ainakin ANXA2  tumankalvon  modifioinneissa  solunjaossa  sytokineesin alussa.  PI(4,5)P2 muoto on tuma-alueelle  tunnusomainen PL-muoto.  ( salvage tie, ei:  de novo tie)

tisdag 18 oktober 2022

ANGIOSTATIINI ja sen hyödylliset ominaisuudet. "Angiostatiini"-valmistettakin on.

 Normaalisti verisuonistossa kiertävästä Glu-plasminogeenistä  muodstuu - sen  havaittua hyytymää ja kiinnityttyä siihen suonen sisäpinnalla-  plasminogeeniä. Normaalisti kuitenkin muodostuu myös angiostatiinia 3%:sti plasminogeenistä.  Onpohdittu, miten  se muodostuu.

tiedetään ainkin, että matrixmetalloproteiineista käsin- niiden aktivoiduttua plasmiinista  preMMP-muodosta MMP-muotoon, usea MMP pystyy pilkkomaan Glu-PLG- muodsta angiotensiinia esiin.  Näistä on mainittu elastaasi tässä alla olevassa linkissä. Elastaasi voi tuottaa kahta eri kokoa angiostatiinia: toisessa on  4 rinkulaa jäljellä ja toisessa vain 3 rinkulaa,   niitä rinkuloita , joita plasminogeenillä ja plasmiinilla on 5 kpl. 

Ainakin lyhemmällä angiostatiinilla on havaittu aivan tuumorin kasvua  vastustavaa vaikutusta.  Suoniston sisällä  hyytymässä alkavaa neovaskularisaatiotaipumusta  tietysti vastustaa heti jo angiostatiinin  pitempikin muoto.  tuumorfeista on identifioitu angiostatiinin kaltainen molekyyli, joka oli hieman päistään lyhempi kuin normaalit angiostatiinimuodot.  Lääketehdas taas on kehittänyt  angiostatiinimuodon, joka kattaa angiostatiinin molempien päiden rakenteet ja on tehty verisuoistossa kiertävästä  plasminogeenistä. Sillä on todettu eläinkokeissa antiproleratiivista vaikutusta, tosin sen käyttäminen tai testaaminen lääkkeenä ei ole helppoa,sillä rakenneta täytyy säilyttää  alle 70 celsiusasteen pakkasessa. 

https://www.haemtech.com/products/protease-inhibitors/human-angiostatin

 


 


Perustava molekyyli PLASMINOGEENI (PLG) omaa kaksi glykoformia ihmisessä Tyyppi I ja Tyyppi II

 https://diapharma.com/plasminogen-plg/

Sitaatti 18.10.2022: 

"Plasminogen (PLG)

Plasmin is released as a zymogen called plasminogen (PLG) from the liver into the factor IX systemic circulation. Two major glycoforms of plasminogen are present in humans – type I plasminogen contains two glycosylation moieties (N-linked to N289 and O-linked to T346), whereas type II plasminogen contains only a single O-linked sugar (O-linked to T346). Type II plasminogen is preferentially recruited to the cell surface over the type I glycoform. Conversely, type I plasminogen appears more readily recruited to blood clots."

(Tässä lähteessä kaavat Plasminogeeni, sen aktivaattorit   t-PA kudosaktivaattori ja  munuaisperäinen u-PA) .

 

 

Pseudogeeni 19q13.42 Diphosphoinositol polyphosphate phosphohydrolase ja sen funktion tekeviä geenejä

 Tämän kaltaista   funktiota on usealla  fosfohydrolaasilla, mutta  tälle geenille ei löytynyt paikan lisäksi muuta erityistietoa. (Tällä ryhmällä 



NUDT3 Nudix Hydrolase 3 Protein Coding 38 GC06M069334 38.75
2
NUDT4 Nudix Hydrolase 4 Protein Coding 40 GC12P093412 37.54
3
NUDT11 Nudix Hydrolase 11 Protein Coding 37 GC0XM051490 36.56
4
NUDT10 Nudix Hydrolase 10 Protein Coding 35 GC0XP051332 33.10
5
ENSG00000267689 Diphosphoinositol Polyphosphate Phosphohydrolase 2, Pseudogene

GeneCards Summary for ENSG00000267689 Gene

ENSG00000267689 (Diphosphoinositol Polyphosphate Phosphohydrolase 2, Pseudogene) is a Pseudogene.

Additional gene information for ENSG00000267689 Gene

IMPA, Inositolimonofosfataasi 1 (8q21.13)

 https://alphafold.ebi.ac.uk/entry/P29218

Annexiini A3, ANXA3 , pilkkoo syklisestä inositoli-1,2-fosfaatista esiin ins(1)fosfaattia

 

( 4q21.21) ANXA3 , Annexin A3

(inositoli-1,2- cykl.fosfaatti-2 fosfohydrolaasi)

https://www.ebi.ac.uk/pdbe/pdbe-kb/proteins/P12429

ANXA3

Organism:

Homo sapiens (Human)

Synonyms:

ANX3

Uniprot:

P12429go to UniProt

Biological function:

Inhibitor of phospholipase A2, also possesses anti-coagulant properties. Also cleaves the cyclic bond of inositol 1,2-cyclic phosphate to form inositol 1-phosphate go to UniProt


Aliases for ANXA3 Gene

https://www.genecards.org/cgi-bin/carddisp.plgene=ANXA3&keywords=ANXA3


  • GeneCards Symbol: ANXA3

  • Annexin A3

  • ANX3

  • Inositol 1,2-Cyclic Phosphate 2-Phosphohydrolase

  • Placental Anticoagulant Protein III

  • 35-Alpha Calcimedin

  • Lipocortin III

  • Annexin-3

  • PAP-III

  • Annexin III (Lipocortin III, 1,2-Cyclic-Inositol-Phosphate Phosphodiesterase, Placental Anticoagulant Protein III, Calcimedin 35-Alpha)

  • Annexin III (Lipocortin III)

  • Calcimedin 35-Alpha

  • Annexin III

External Ids for ANXA3 Gene

Entrez Gene Summary for ANXA3 GeneThis gene encodes a member of the annexin family. Members of this calcium-dependent phospholipid-binding protein family play a role in the regulation of cellular growth and in signal transduction pathways. This protein functions in the inhibition of phopholipase A2 and cleavage of inositol 1,2-cyclic phosphate to form inositol 1-phosphate. This protein may also play a role in anti-coagulation. [provided by RefSeq, Jul 2008]

GeneCards Summary for ANXA3 Gene

ANXA3 (Annexin A3) is a Protein Coding gene. Diseases associated with ANXA3 include Ovarian Cancer and Prostate Cancer. Among its related pathways are Prostaglandin synthesis and regulation. Gene Ontology (GO) annotations related to this gene include calcium ion binding and calcium-dependent phospholipid binding. An important paralog of this gene is ANXA4.

UniProtKB/Swiss-Prot Summary for ANXA3 Gene

Inhibitor of phospholipase A2, also possesses anti-coagulant properties. Also cleaves the cyclic bond of inositol 1,2-cyclic phosphate to form inositol 1-phosphate. ( ANXA3_HUMAN,P12429 )